TEACHING 2011-2012
7CCMCS04
Dynamical Analysis of Complex Systems
4CCM131A (CM131A) - 5CCM131B Introduction to Dynamical Systems
RESEARCH INTERESTS
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Theory of spin glasses, complexity and structure of metastable states
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Out of equilibrium dynamics, fluctuation dissipation relations, effective temperatures interpretation
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Stochastic processes and critical phenomena
on finitely connected random graphs (Ising models, Kuramoto oscillators,
percolation etc)
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Cellular signaling networks, proteomics, gene regulatory networks:
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null models, entropy measures and characterization of distances
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network dynamics and generation of complex networks ensembles
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sampling and inference
PUBLICATIONS/PREPRINTS
E Roberts, A Annibale, ACC Coolen
Unbiased algorithms for the generation of random graphs
with controlled topological properties
(pdf)
Proceedings of the NOMA 2011 Conference (Evora-Portugal),
Springer Proceedings in Mathematics (PROM), to appear (2012).
ACC Coolen, F Fraternali, A Annibale, LP Fernandes, J Kleinjung
Modelling biological networks via tailored random graphs
(pdf)
in Handbook of statistical systems biology
ISBN: 978-0-470-71086-9
A Annibale, ACC Coolen
What you see is not what you get: how sampling affects
macroscopic features of biological networks
Interface Focus 2011, 1(6) ,
(pdf)
A Annibale, ACC Coolen, G Bianconi
Network resilience against intelligent attacks constrained by
degree dependent node removal cost
J. Phys. A: Math. Theor: 43 (39) 2010,
arXiv:1005.4283
LP Fernandes, A Annibale, J Kleinjung, ACC Coolen and F Fraternali
Protein networks reveal detection bias and species consistency
when viewed through information-theoretic glasses
PLoSONE 5(8) e12083 (2010),
(pdf)
A Annibale, ACC Coolen, LP Fernandes, F Fraternali, J Kleinjung
Tailored graph ensembles as proxies or null models for real networks I:
tools for quantifying structure,
J. Phys. A: Math. Theor. 42 485001, arXiv:0908.1759
ACC Coolen, A De Martino, A Annibale
Constrained Markovian dynamics of random graphs,
J. Stat. Phys. 136 (2009), 1035-1067 ,
arXiv:0905.4155
A Annibale, P Sollich
Dynamic heterogeneities in critical coarsening: Exact results for correlation and response fluctuations in finite-sized spherical models,
J Stat Mech P02064 (2009),
arXiv:0811.3168
A Annibale, P Sollich
Fluctuation-dissipation relations in critical coarsening:
crossover from unmagnetized to magnetized initial states,
J.Phys.A: Math.Theor: 41 (2008) 135001
arXiv:0801.1381
A Annibale, P Sollich
Spin, bond and global fluctuation-dissipation relations in
the non-equilibrium spherical ferromagnet,
J.Phys.A: Math.Gen: 39 (2006) 2853-2907
arXiv:cond-mat/0510731
A Annibale, G Gualdi, A Cavagna
Coexistence of supersymmetirc and supersymmetry-breaking states in spherical spin-glasses,
J.Phys.A: Math.Gen: 37 (2004) 11311-11320
arXiv:cond-mat/0406466
A Annibale, A Cavagna, I Giardina, G Parisi, E Trevigne
The role of the Becchi-Rouet-Stora-Tyutin supersymmetry in the calculation of the complexity for the Sherrington-Kirkpatrick model,
J.Phys.A: Math.Gen.36 (2003) 10937
arXiv:cond-mat/0307465
A Annibale, A Cavagna, I Giardina, G Parisi
Supersymmetric quenched complexity in the Sherrington-Kirkpatrick model,
Phys.Rev.E 68, 061103 (2003)
arXiv:cond-mat/0304698
RECENT SEMINARS
"Effects of sampling on macroscopic features of biological networks", Symposium of Synthetic and Systems Biology,
Imperial College London, 16 Nov 2011
(pdf)
"Network resilience against intelligent attacks",
University of Chichester, 1-3 September 2010
"Quantifying and comparing complexity of cellular networks",
University College Dublin, 15-17 June 2009
"Signaling networks and random graphs", King's College London, 26 June 2009
The key role of mathematics in 21st century biology and medicine
"Cellular networks: structure beyond degree statistics", King's College London, 26 May 2009
"Fluctuation-dissipation relations and heterogeneities in coarsening systems",
The University of Manchester, 22 October 2008